PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF065400200CFD_t1
Common NameTRAES_3BF065400200CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 232aa    MW: 26303 Da    PI: 9.1425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF065400200CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.21.9e-15136219190
                              EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                              f+k +++s+v+   +l lp +f+  +  g    ++ t+tlede+g +++ ++   k++    l++GW++F+ +++L +gD +vF+ 
  TRAES3BF065400200CFD_t1 136 FVKPMKQSHVTGGFWLGLPSHFCGLYlpG----SDDTITLEDEEGVEYKTRYLALKTG----LSAGWRRFALDHNLVDGDCLVFEW 213
                              89*********************888643....4569***************666666....***********************5 PP

                              -.SSSEE CS
                       B3  85 d.grsef 90 
                              + + ++f
  TRAES3BF065400200CFD_t1 214 VvW-NTF 219
                              524.444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-17132221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-21132223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-24134224No hitNo description
SMARTSM010196.5E-18136229IPR003340B3 DNA binding domain
PfamPF023622.2E-13136222IPR003340B3 DNA binding domain
PROSITE profilePS5086310.433136227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAGALAYEEQ RRRQMEENDR KLEELGLHQL SAAVREAAGR KPSPVRLEAK SVKPKQVPRD  60
APVRQSSRVA SLPKQPKYRY EVLPPFGITC RTNGRGSSTR SDIINRVDAT DEARLHANSE  120
AQELLRKLVP GGNPSFVKPM KQSHVTGGFW LGLPSHFCGL YLPGSDDTIT LEDEEGVEYK  180
TRYLALKTGL SAGWRRFALD HNLVDGDCLV FEWVVWNTFY VRFLICYYAF RC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-156HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227844.15e-80PREDICTED: B3 domain-containing protein Os06g0194400-like
RefseqXP_010227845.15e-80PREDICTED: B3 domain-containing protein Os06g0194400-like
SwissprotQ69V368e-70Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A080YUW71e-174A0A080YUW7_WHEAT; Uncharacterized protein
STRINGMLOC_76431.13e-84(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-46B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]